Processing Data

We have downloaded most of the small dataset in the repository.

Drug-Target Binding Benchmark Dataset

We list public Drug-Target Binding Benchmark Dataset that is supported by DeepPurpose and corresponding downloading and processing function.

Dataset downloading and processing Function
BindingDB download_BindingDB() to download the data and process_BindingDB() to process the data
DAVIS load_process_DAVIS() to download and process the data
KIBA load_process_KIBA() to download and process the data

Repurposing Dataset

We list public Repurposing Dataset that is supported by DeepPurpose and corresponding downloading and processing function.

Dataset downloading and processing Function
Curated Antiviral Drugs Library load_antiviral_drugs() to load and process the data
Broad Repurposing Hub load_broad_repurposing_hub() downloads and process the data

Bioassay Data for COVID-19

Dataset downloading and processing Function
AID1706 load_AID1706_SARS_CoV_3CL() to load and process

COVID-19 Targets

Dataset downloading and processing Function
SARS-CoV 3CL Protease load_SARS_CoV_Protease_3CL()
SARS-CoV2 3CL Protease load_SARS_CoV2_Protease_3CL()
SARS_CoV2 RNA Polymerase load_SARS_CoV2_RNA_polymerase()
SARS-CoV2 Helicase load_SARS_CoV2_Helicase()
SARS-CoV2 3to5_exonuclease load_SARS_CoV2_3to5_exonuclease()
SARS-CoV2 endoRNAse load_SARS_CoV2_endoRNAse()

Technical Details of Function